De novo genome assemblyΒΆ
A module in the fall 2018 edition of IN-BIOSx000
Slides:
Introduction to the assembly module new
Principles and problems of de novo genome assembly new
De novo assembly using velvet new
- Day 1: Assembly using velvet
- Day 1: Assembly using SPAdes
- Day 1: Assembly using Canu
- Day 2: Comparing assemblies to a reference using QUAST
- Day 2: Mapping reads to an assembly
- Day 2: Assembly evaulation and improvement with Reapr
- Optional: Assembly using miniasm and racon
- Optional: Mapping long reads using bwa
- Source: Source
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