Lecture slides 2020

Fundamentals of Molecular Biology (GG)

• Day 01: Molecular Biology

HTS & applications (TR)

• Day 01: HTS

Illumina sequencing (AS)

• Day 01: Illumina sequencing

PacBio technology (AT)

• Day 01: PacBio technology

Oxford Nanopore technology (THa)

• Day 02: Oxford Nanopore

Library preparation (AS)

• Day 02: Library preparation

Experimental design (AS)

• Day 02: Experimental design

Basic file formats (AS)

• Day 02: Basic file formats

Pre-processing of HTS data (AS)

• Day 03: Pre-processing of HTS data

Algorithms (THu)

• Day 03-04: Algorithms alignment
• Day 03-04: Algorithms mapping

De novo assembly (KL)

• Day 05-06: De novo assembly A Introduction to assembly module
• Day 05-06: De novo assembly C Principles and problems of de novo genome assembly
• Day 05-06: De novo assembly E De novo assembly using Velvet
• Day 05-06: De novo assembly F Assembly Programs
• Day 05-06: De novo assembly G QUAST

Statistical genomics (IG)

• Day 07-08: Statistical genomics

Introduction to machine learning in computational biology (MP)

• Day 09: Overview of ML in Computational Biology
• Day 09: Introduction to ML
• Day 09: ML Models
• Day 09: Data Representation

Small RNA transcriptomics (TBR)

• Day 10: Small RNA transcriptomics

Introduction to somatic variant calling (DV)

• Day 10: Introduction to somatic variant calling

Interpretation of DNA variation in the context of cancer (SN)

• Day 10: Interpretation of DNA variation in the context of cancer

Final course informatioin (TR)

• Day 10: Small RNA transcriptomics