Lecture slides

Fundamentals of Molecular biology

• Oct 22: Molecular Biology

High throughput sequencing (HTS)

• Oct 22 : HTS - Introduction
• Oct 22 : HTS - PacBio
• Oct 23 : HTS - Oxford Nanopore
• Oct 23 : HTS - Illumina
• Oct 23 : HTS - Experimental Design
• Oct 23 : HTS - Library preparation

File formats and data pre-processing

• Oct 23 : File formats
• Oct 24 : Data pre-processing

Algorithms

• Oct 24: Algorithms - Mapping
• Oct 24: Algorithms - Alignment

De novo assembly

• Oct 25: De novo assembly

Variant calling

• Oct 30: VC - introduction
• Oct 30: VC - basic pipeline
• Oct 30: VC - generating reports
• Oct 30: VC - VCF
• Oct 30: VC - advanced pipeline
• Oct 30: VC - functional annotation

Statistical genomics

• Nov 01: Statistical genomics